3O2Y

Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid

Zhou, Y.Shaw, N.Li, Y.Zhao, Y.Zhang, R.Liu, Z.-J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Prostaglandin-H2 D-isomerase
A, B
162Homo sapiensMutation(s): 1 
Gene Names: PTGDS (PDS)
EC: 5.3.99.2
Find proteins for P41222 (Homo sapiens)
Go to Gene View: PTGDS
Go to UniProtKB:  P41222
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLA
Query on OLA

Download SDF File 
Download CCD File 
A, B
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PLM
Query on PLM

Download SDF File 
Download CCD File 
A, B
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.197 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 90.221α = 90.00
b = 90.221β = 90.00
c = 35.635γ = 90.00
Software Package:
Software NamePurpose
PHASESphasing
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-09-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance