3NXK

Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni

Kim, Y.Makowska-Grzyska, M.Maltseva, N.Papazisi, L.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytoplasmic L-asparaginase
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
334Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819Mutation(s): 0 
Gene Names: ansACj0029
EC: 3.5.1.1
UniProt
Find proteins for Q0PC96 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168))
Explore Q0PC96 
Go to UniProtKB:  Q0PC96
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0PC96
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth E],
EA [auth F],
FA [auth F],
HA [auth G],
I [auth A],
AA [auth E],
EA [auth F],
FA [auth F],
HA [auth G],
I [auth A],
IA [auth G],
J [auth A],
JA [auth H],
KA [auth H],
M [auth B],
N [auth B],
R [auth C],
S [auth C],
V [auth D],
W [auth D],
Z [auth E]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
BA [auth E],
CA [auth E],
DA [auth E],
L [auth A],
O [auth B],
BA [auth E],
CA [auth E],
DA [auth E],
L [auth A],
O [auth B],
P [auth B],
Q [auth B],
T [auth C],
X [auth D],
Y [auth D]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ACY
Query on ACY

Download Ideal Coordinates CCD File 
GA [auth F],
K [auth A],
U [auth C]
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.321α = 90
b = 127.653β = 103.05
c = 149.832γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
HKL-3000phasing
BALBESphasing
MOLREPphasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-08-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance