3NP2

Crystal Structure of Pd(allyl)/apo-E45C/C48A-rHLFr


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin.

Wang, Z.Takezawa, Y.Aoyagi, H.Abe, S.Hikage, T.Watanabe, Y.Kitagawa, S.Ueno, T.

(2011) Chem.Commun.(Camb.) 47: 170-172

  • DOI: 10.1039/c0cc02221g
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Apo-ferritin (apo-Fr) mutants are used as scaffolds to accommodate palladium (allyl) complexes. Various coordination arrangements of the Pd complexes are achieved by adjusting the positions of cysteine and histidine residues on the interior surface o ...

    Apo-ferritin (apo-Fr) mutants are used as scaffolds to accommodate palladium (allyl) complexes. Various coordination arrangements of the Pd complexes are achieved by adjusting the positions of cysteine and histidine residues on the interior surface of the apo-Fr cage.


    Organizational Affiliation

    Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Nagoya, 464-8602, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ferritin light chain
X
174Equus caballusMutation(s): 2 
Gene Names: FTL
Find proteins for P02791 (Equus caballus)
Go to Gene View: FTL
Go to UniProtKB:  P02791
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PD
Query on PD

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X
PALLADIUM ION
Pd
MUJIDPITZJWBSW-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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X
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

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X
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PLL
Query on PLL

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X
Palladium(II) allyl complex
C3 H5 Pd
WTWGCTVOVPTEEU-CPNWEVAQAE
 Ligand Interaction
CD
Query on CD

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X
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.199 
  • Space Group: F 4 3 2
Unit Cell:
Length (Å)Angle (°)
a = 182.296α = 90.00
b = 182.296β = 90.00
c = 182.296γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data collection
REFMACrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance