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Download EndnoteCrystal Structure of Integrase from MRSA strain Staphylococcus aureus
Kim, Y., Tesar, C., Gornicki, P., Joachimiak, A.To be published.
3NKH
Crystal Structure of Integrase from MRSA strain Staphylococcus aureus
- DOI: 10.2210/pdb3NKH/pdb
- Classification: RECOMBINATION
- Organism(s): Staphylococcus aureus subsp. aureus USA300_TCH1516
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2010-06-19 Released: 2010-08-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.189
- R-Value Work: 0.156
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Integrase | A, B | 244 | Staphylococcus aureus subsp. aureus USA300_TCH1516 | Mutation(s): 0 Gene Names: USA300HOU_0850 |
| Protein Feature View is not available: No corresponding UniProt sequence found. | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MRD Query on MRD | A, B | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | Ligand Interaction | |
| MPD Query on MPD | A, B | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.189
- R-Value Work: 0.156
- R-Value Observed: 0.158
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.278 | α = 90 |
| b = 102.34 | β = 90 |
| c = 157.256 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| RESOLVE | model building |
| SOLVE | phasing |
| BUCCANEER | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| RESOLVE | phasing |
| BUCCANEER | phasing |
Entry History
Deposition Data
- Deposited Date: 2010-06-19
- Released Date: 2010-08-18 Deposition Author(s): Kim, Y., Tesar, C., Gornicki, P., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
