3NGP

High resolution structure of alpha-spectrin SH3 domain mutant with a redesigned core


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.084 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

High-resolution structure of an alpha-spectrin SH3-domain mutant with a redesigned hydrophobic core.

Camara-Artigas, A.Andujar-Sanchez, M.Ortiz-Salmeron, E.Cuadri, C.Cobos, E.S.Martin-Garcia, J.M.

(2010) Acta Crystallogr.,Sect.F 66: 1023-1027

  • DOI: 10.1107/S1744309110030095

  • PubMed Abstract: 
  • The alpha-spectrin SH3 domain (Spc-SH3) is a small modular domain which has been broadly used as a model protein in folding studies and these studies have sometimes been supported by structural information obtained from the coordinates of Spc-SH3 mut ...

    The alpha-spectrin SH3 domain (Spc-SH3) is a small modular domain which has been broadly used as a model protein in folding studies and these studies have sometimes been supported by structural information obtained from the coordinates of Spc-SH3 mutants. The structure of B5/D48G, a multiple mutant designed to improve the hydrophobic core and as a consequence the protein stability, has been solved at 1 A resolution. The crystals belonged to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a=24.79, b=37.23, c=62.95 A. This mutant also bears a D48G substitution in the distal loop and this mutation has also been reported to increase the stability of the protein by itself. The structure of the B5/D48G mutant shows a highly packed hydrophobic core and a more ordered distal loop compared with previous Spc-SH3 structures.


    Organizational Affiliation

    Departamento de Química-Física, Bioquímica y Química Inorgánica, Universidad de Almería, Carretera Sacramento, Almería 04120, Spain. acamara@ual.es




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Spectrin alpha chain, brain
A
62Gallus gallusMutation(s): 6 
Gene Names: SPTAN1 (SPTA2)
Find proteins for P07751 (Gallus gallus)
Go to Gene View: SPTAN1
Go to UniProtKB:  P07751
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.084 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.168 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 24.787α = 90.00
b = 37.231β = 90.00
c = 62.949γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
DNAdata collection
SCALAdata scaling
PHENIXrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-09-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-03-21
    Type: Database references