3NG9

Structure to Function Correlations for Adeno-associated Virus Serotype 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.230 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure to Function Correlations for Adeno-Associated Virus serotype 1

Govindasamy, L.Miller, E.B.Gurda, B.McKenna, R.Zolotukhin, S.Muzyczka, N.Agbandje-McKenna, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Capsid protein
A, B, C, D, E, F, G, H, I, J
A, B, C, D, E, F, G, H, I, J
736Adeno-associated virus - 1Mutation(s): 0 
UniProt
Find proteins for Q9WBP8 (Adeno-associated virus - 1)
Explore Q9WBP8 
Go to UniProtKB:  Q9WBP8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WBP8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADE
Query on ADE

Download Ideal Coordinates CCD File 
AA [auth I],
CA [auth J],
K [auth A],
M [auth B],
P [auth C],
AA [auth I],
CA [auth J],
K [auth A],
M [auth B],
P [auth C],
R [auth D],
T [auth E],
V [auth F],
X [auth G],
Y [auth H]
ADENINE
C5 H5 N5
GFFGJBXGBJISGV-UHFFFAOYSA-N
 Ligand Interaction
CYT
Query on CYT

Download Ideal Coordinates CCD File 
BA [auth I],
DA [auth J],
L [auth A],
N [auth B],
O [auth B],
BA [auth I],
DA [auth J],
L [auth A],
N [auth B],
O [auth B],
Q [auth C],
S [auth D],
U [auth E],
W [auth F],
Z [auth H]
6-AMINOPYRIMIDIN-2(1H)-ONE
C4 H5 N3 O
OPTASPLRGRRNAP-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.230 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 262.7α = 90
b = 262.7β = 90
c = 612.3γ = 120
Software Package:
Software NamePurpose
MAR345data collection
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-12-21
    Type: Initial release
  • Version 1.1: 2017-11-08
    Changes: Refinement description