3MYT

Crystal structure of Ketosteroid Isomerase D38HD99N from Pseudomonas testosteroni (tKSI)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.961 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Ketosteroid Isomerase D38HD99N from Pseudomonas Testosteroni (tKSI)

Schwans, J.Sunden, F.Gonzalez, A.Tsai, Y.Herschlag, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Steroid Delta-isomerase
A, B, C, D
125Comamonas testosteroniMutation(s): 2 
Gene Names: ksi
EC: 5.3.3.1
Find proteins for P00947 (Comamonas testosteroni)
Go to UniProtKB:  P00947
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EQU
Query on EQU

Download SDF File 
Download CCD File 
A, B, C
EQUILENIN
C18 H18 O2
PDRGHUMCVRDZLQ-WMZOPIPTSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.961 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.223 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 64.274α = 90.00
b = 64.274β = 90.00
c = 504.199γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
SCALAdata scaling
REFMACrefinement
XDSdata reduction
Blu-Icedata collection
PDB_EXTRACTdata extraction
Web-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-11-23
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description