3MPD

Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi, cubic form, apo


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi

Gardberg, A.Edwards, T.E.Staker, B.SSGCID

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleoside diphosphate kinase
A, B
151Encephalitozoon cuniculi (strain GB-M1)Mutation(s): 0 
Gene Names: NDK1
EC: 2.7.4.6
Find proteins for Q8SRM7 (Encephalitozoon cuniculi (strain GB-M1))
Go to UniProtKB:  Q8SRM7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 111.330α = 90.00
b = 111.330β = 90.00
c = 111.330γ = 90.00
Software Package:
Software NamePurpose
Blu-Icedata collection
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-05-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance