3ML3 | pdb_00003ml3

Crystal structure of the IcsA autochaperone region

PDB DOI: https://doi.org/10.2210/pdb3ML3/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Shigella flexneri
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM mpstruc

Deposited: 2010-04-16 Released: 2011-03-02
Deposition Author(s): Diezmann, D., Kuhnel, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.219 (Depositor), 0.217 (DCC)
R-Value Work:
0.196 (Depositor), 0.196 (DCC)
R-Value Observed:
0.198 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3ML3

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the Autochaperone Region from the Shigella flexneri Autotransporter IcsA

Kuhnel, K., Diezmann, D.

(2011) J Bacteriol 193: 2042-2045

PubMed: 21335457 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1128/JB.00790-10
Primary Citation Related Structures:
3ML3

PubMed Abstract:
The IcsA (intracellular spread gene A) autotransporter from Shigella flexneri is a key virulence factor. We identified a stable fragment comprising residues 591 to 758, which corresponds to the autochaperone region of the IcsA passenger domain. We showed that thermal unfolding of the autochaperone region is reversible and determined its crystal structure at 2.0-Å resolution.

Organizational Affiliation

Department of Neurobiology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany. kkuehne@gwdg.de

Macromolecule Content

Total Structure Weight: 20.24 kDa
Atom Count: 1,236
Modeled Residue Count: 156
Deposited Residue Count: 189
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein icsA autotransporter	A	189	Shigella flexneri	Mutation(s): 0 Gene Names: CP0182, icsA, virG Membrane Entity: Yes
UniProt
Find proteins for Q7BCK4 (Shigella flexneri) Explore Q7BCK4 Go to UniProtKB: Q7BCK4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7BCK4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.219 (Depositor), 0.217 (DCC)
R-Value Work: 0.196 (Depositor), 0.196 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.22	α = 90
b = 104.22	β = 90
c = 61.58	γ = 120

Software Package:

Software Name	Purpose
SHELXS	phasing
REFMAC	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-03-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-03-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.