3MFG

Crystal structure of Toxic Shock Syndrome Toxin 1 (TSST-1) in complex with the human T cell receptor beta chain Vbeta2.1 (EP-8)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of Toxic Shock Syndrome Toxin 1 (TSST-1) in complex with the human T cell receptor beta chain Vbeta2.1 (EP-8)

Bonsor, D.A.Sundberg, E.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Toxic shock syndrome toxin-1
A
194Staphylococcus aureus (strain N315)Mutation(s): 0 
Gene Names: tst
Find proteins for A0A0H3JMU6 (Staphylococcus aureus (strain N315))
Go to UniProtKB:  A0A0H3JMU6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
V_segment translation product
B
118Homo sapiensMutation(s): 0 
Gene Names: TRBV20-1 (TCRBV2S1)
Find proteins for A0A5B4 (Homo sapiens)
Go to UniProtKB:  A0A5B4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.234 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 242.620α = 90.00
b = 242.620β = 90.00
c = 47.140γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
Blu-Icedata collection
REFMACrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-11-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance