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 3MAY | pdb_00003may

Crystal structure of a secreted Mycobacterium tuberculosis heme-binding protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.256 (Depositor), 0.231 (DCC) 
  • R-Value Work: 
    0.195 (Depositor), 0.202 (DCC) 
  • R-Value Observed: 
    0.198 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 3MAY

This is version 1.2 of the entry. See complete history. 

Literature

Discovery and characterization of a unique mycobacterial heme acquisition system.

Tullius, M.V., Harmston, C.A., Owens, C.P., Chim, N., Morse, R.P., McMath, L.M., Iniguez, A., Kimmey, J.M., Sawaya, M.R., Whitelegge, J.P., Horwitz, M.A., Goulding, C.W.

(2011) Proc Natl Acad Sci U S A 108: 5051-5056

  • DOI: https://doi.org/10.1073/pnas.1009516108
  • Primary Citation Related Structures: 
    3MAY

  • PubMed Abstract: 

    Mycobacterium tuberculosis must import iron from its host for survival, and its siderophore-dependent iron acquisition pathways are well established. Here we demonstrate a newly characterized pathway, whereby M. tuberculosis can use free heme and heme from hemoglobin as an iron source. Significantly, we identified the genomic region, Rv0202c-Rv0207c, responsible for the passage of heme iron across the mycobacterial membrane. Key players of this heme uptake system were characterized including a secreted protein and two transmembrane proteins, all three specific to mycobacteria. Furthermore, the crystal structure of the key heme carrier protein Rv0203 was found to have a unique fold. The discovery of a unique mycobacterial heme acquisition pathway opens new avenues of exploration into mycobacterial therapeutics.


  • Organizational Affiliation: 
    • Departments of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697, USA.

Macromolecule Content 

  • Total Structure Weight: 83.28 kDa 
  • Atom Count: 5,379 
  • Modeled Residue Count: 743 
  • Deposited Residue Count: 808 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
POSSIBLE EXPORTED PROTEIN101Mycobacterium tuberculosisMutation(s): 0 
Gene Names: MT0213, Rv0203
UniProt
Find proteins for O53654 (Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh))
Explore O53654 
Go to UniProtKB:  O53654
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO53654
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.256 (Depositor), 0.231 (DCC) 
  • R-Value Work:  0.195 (Depositor), 0.202 (DCC) 
  • R-Value Observed: 0.198 (Depositor) 
Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.671α = 90
b = 72.671β = 90
c = 173.909γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
MLPHAREphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-03-23
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-11-06
    Changes: Data collection, Database references, Structure summary