3LOI | pdb_00003loi

Crystal structures of Cupin superfamily BbDUF985 from Branchiostoma belcheri tsingtauense in the apo and GDP-bound forms

• PDB DOI: https://doi.org/10.2210/pdb3LOI/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Branchiostoma belcheri tsingtauense
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-02-04 Released: 2010-06-02 
• Deposition Author(s): Zou, C.Z., Du, Y., He, Y.-X., Saren, G., Zhang, X., Chen, Y., Zhang, S.-C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.250 (Depositor), 0.249 (DCC) 
• R-Value Work: 
  0.220 (Depositor), 0.223 (DCC) 
• R-Value Observed: 
  0.221 (Depositor) 

Starting Model: experimental

Literature

Crystal structures of the apo and GDP-bound forms of a cupin-like protein BbDUF985 from Branchiostoma belcheri tsingtauense

Zou, C.Z., Du, Y., He, Y.-X., Saren, G., Zhang, X., Chen, Y., Zhang, S.-C.

(2010) Proteins 

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 19.56 kDa 
• Atom Count: 1,467 
• Modeled Residue Count: 161 
• Deposited Residue Count: 172 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A	172	Branchiostoma belcheri tsingtauense	Mutation(s): 0
UniProt
Find proteins for Q6WRH7 (Branchiostoma belcheri tsingtauense) Explore Q6WRH7  Go to UniProtKB:  Q6WRH7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.250 (Depositor), 0.249 (DCC) 
• R-Value Work:  0.220 (Depositor), 0.223 (DCC) 
• R-Value Observed: 0.221 (Depositor) 

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.541	α = 90
b = 91.541	β = 90
c = 173.218	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-06-02 
Deposition Author(s): Zou, C.Z., Du, Y., He, Y.-X., Saren, G., Zhang, X., Chen, Y., Zhang, S.-C.

Revision History  

• Version 1.0: 2010-06-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Refinement description