Download MendeleyCrystal structure of putative DNA binding protein from Methanocaldococcus jannaschii.
Chang, C., Chhor, G., Cobb, G., Joachimiak, A.To be published.
3LHK
Crystal structure of putative DNA binding protein from Methanocaldococcus jannaschii.
- PDB DOI: 10.2210/pdb3LHK/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Methanocaldococcus jannaschii DSM 2661
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-01-22 Released: 2010-02-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.249
- R-Value Work: 0.203
- R-Value Observed: 0.206
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative DNA binding protein MJ0014 | A, B, C, D | 154 | Methanocaldococcus jannaschii DSM 2661 | Mutation(s): 0 Gene Names: MJ0014 |  |
UniProt | |||||
Find proteins for Q60329 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore Q60329 Go to UniProtKB: Q60329 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q60329 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.249
- R-Value Work: 0.203
- R-Value Observed: 0.206
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.349 | α = 90 |
| b = 86.16 | β = 90 |
| c = 115.464 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | model building |
| RESOLVE | model building |
| Coot | model building |
| ARP/wARP | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Deposited Date: 2010-01-22
- Released Date: 2010-02-02 Deposition Author(s): Chang, C., Chhor, G., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-02-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
