3LHH

The crystal structure of CBS domain protein from Shewanella oneidensis MR-1.

• PDB DOI:  https://doi.org/10.2210/pdb3LHH/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Shewanella oneidensis MR-1
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2010-01-22 Released: 2010-02-02 
• Deposition Author(s): Tan, K., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.265 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 

Literature

The crystal structure of CBS domain protein from Shewanella oneidensis MR-1.

Tan, K., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 19.94 kDa 
• Atom Count: 1,076 
• Modelled Residue Count: 125 
• Deposited Residue Count: 172 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CBS domain protein	A	172	Shewanella oneidensis MR-1	Mutation(s): 0  Gene Names: SO_2815
UniProt
Find proteins for Q8EDE1 (Shewanella oneidensis (strain MR-1)) Explore Q8EDE1  Go to UniProtKB:  Q8EDE1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AMP	B [auth A]	ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.265 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.605	α = 90
b = 55.257	β = 90
c = 78.822	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELXD	phasing
MLPHARE	phasing
DM	model building
ARP	model building
WARP	model building
HKL-3000	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-02-02 
Deposition Author(s): Tan, K., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2010-02-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance