3L32 | pdb_00003l32

Structure of the dimerisation domain of the rabies virus phosphoprotein

PDB DOI: https://doi.org/10.2210/pdb3L32/pdb

Classification: VIRAL PROTEIN
Organism(s): Rabies virus China/MRV
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-12-16 Released: 2010-02-16
Deposition Author(s): Ivanov, I., Crepin, T., Jamin, M., Ruigrok, R.W.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.228 (Depositor), 0.232 (DCC)
R-Value Work:
0.196 (Depositor), 0.197 (DCC)
R-Value Observed:
0.198 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Structure of the dimerisation domain of the rabies virus phosphoprotein

Ivanov, I., Crepin, T., Jamin, M., Ruigrok, R.W.H.

(2010) J Virol

PubMed: 20089657 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1128/JVI.02557-09
Primary Citation Related Structures:
3L32

PubMed Abstract:
The crystal structure of the dimerization domain of rabies virus phosphoprotein was determined. The monomer consists of two alpha-helices that make a helical hairpin held together mainly by hydrophobic interactions. The monomer has a hydrophilic and a hydrophobic face, and in the dimer two monomers pack together through their hydrophobic surfaces. This structure is very different from the dimerization domain of the vesicular stomatitis virus phosphoprotein and also from the tetramerization domain of the Sendai virus phosphoprotein, suggesting that oligomerization is conserved but not structure.

Organizational Affiliation

UVHCI, UMI 3265 UJF-EMBL-CNRS, BP 181, 38042 Grenoble, Cedex 9, France.

Macromolecule Content

Total Structure Weight: 10.69 kDa
Atom Count: 811
Modeled Residue Count: 89
Deposited Residue Count: 90
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoprotein	A, B	45	Rabies virus China/MRV	Mutation(s): 0 Gene Names: P
UniProt
Find proteins for Q0GBY3 (Rabies virus (strain China/MRV)) Explore Q0GBY3 Go to UniProtKB: Q0GBY3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q0GBY3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.228 (Depositor), 0.232 (DCC)
R-Value Work: 0.196 (Depositor), 0.197 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.29	α = 90
b = 43.29	β = 90
c = 192.02	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-02-16

Deposition Author(s):

Ruigrok, R.W.H.

Revision History (Full details and data files)

Version 1.0: 2010-02-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.