3KZW

Crystal structure of cytosol aminopeptidase from Staphylococcus aureus COL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.222 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytosol aminopeptidase
A, B, C, D, E, F, G, H, I, J, K, L
A, B, C, D, E, F, G, H, I, J, K, L
515Staphylococcus aureus subsp. aureus COLMutation(s): 0 
Gene Names: SACOL0945
EC: 3.4.11.1
UniProt
Find proteins for A0A0H2WYH0 (Staphylococcus aureus (strain COL))
Explore A0A0H2WYH0 
Go to UniProtKB:  A0A0H2WYH0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H2WYH0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
IC [auth J],
MB [auth G],
QA [auth D],
T [auth A]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
AB [auth F],
AC [auth I],
BA [auth C],
BB [auth F],
CA [auth C],
AB [auth F],
AC [auth I],
BA [auth C],
BB [auth F],
CA [auth C],
CB [auth F],
CC [auth J],
DA [auth C],
DB [auth F],
DC [auth J],
EA [auth C],
EC [auth J],
FA [auth C],
FB [auth G],
FC [auth J],
GA [auth C],
GB [auth G],
GC [auth J],
HB [auth G],
IA [auth D],
IB [auth G],
JA [auth D],
JB [auth G],
JC [auth K],
KA [auth D],
KC [auth K],
LA [auth D],
LC [auth K],
M [auth A],
MA [auth D],
MC [auth K],
N [auth A],
NA [auth D],
NB [auth H],
NC [auth K],
O [auth A],
OB [auth H],
OC [auth K],
P [auth A],
PB [auth H],
Q [auth A],
QB [auth H],
RA [auth E],
RB [auth H],
RC [auth L],
SA [auth E],
SB [auth H],
SC [auth L],
TA [auth E],
TC [auth L],
U [auth B],
UA [auth E],
UC [auth L],
V [auth B],
VA [auth E],
VB [auth I],
VC [auth L],
W [auth B],
WA [auth E],
WB [auth I],
X [auth B],
XB [auth I],
Y [auth B],
YB [auth I],
Z [auth B],
ZA [auth F],
ZB [auth I]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
AA [auth B],
BC [auth I],
EB [auth F],
HA [auth C],
HC [auth J],
AA [auth B],
BC [auth I],
EB [auth F],
HA [auth C],
HC [auth J],
KB [auth G],
LB [auth G],
OA [auth D],
PA [auth D],
PC [auth K],
QC [auth K],
R [auth A],
S [auth A],
TB [auth H],
UB [auth H],
WC [auth L],
XA [auth E],
XC [auth L],
YA [auth E]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 143.383α = 90
b = 154.733β = 90
c = 340.101γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
PHASERphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-01-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description