Download MendeleyCrystal structure of triosephosphate isomerase from bartonella henselae at 1.6A resolution
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Edwards, T.E., Staker, B.To be published.
3KXQ
Crystal structure of triosephosphate isomerase from bartonella henselae at 1.6A resolution
- PDB DOI: https://doi.org/10.2210/pdb3KXQ/pdb
- Classification: ISOMERASE
- Organism(s): Bartonella henselae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-12-03 Released: 2009-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.186
- R-Value Work: 0.155
- R-Value Observed: 0.156
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Triosephosphate isomerase | 275 | Bartonella henselae | Mutation(s): 0 Gene Names: tpiA, BH05680 EC: 5.3.1.1 |  | |
UniProt | |||||
Find proteins for Q8L1Z5 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)) Explore Q8L1Z5 Go to UniProtKB: Q8L1Z5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8L1Z5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | D [auth A], E [auth A], G [auth B], H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NO3 Query on NO3 | C [auth A], F [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.186
- R-Value Work: 0.155
- R-Value Observed: 0.156
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M33KXQ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.9 | α = 90 |
| b = 141.05 | β = 109.68 |
| c = 44.93 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2009-12-22 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-12-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
