3KXA

Crystal Structure of NGO0477 from Neisseria gonorrhoeae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The crystal structure of NGO0477 from Neisseria gonorrhoeae reveals a novel protein fold incorporating a helix-turn-helix motif.

Ren, J.Sainsbury, S.Nettleship, J.E.Saunders, N.J.Owens, R.J.

(2010) Proteins 78: 1798-1802


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative uncharacterized proteinA, B, C, D141Neisseria gonorrhoeae FA 1090Mutation(s): 0 
Gene Names: NGO0477NGO_0477
Find proteins for Q5F9C2 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090))
Explore Q5F9C2 
Go to UniProtKB:  Q5F9C2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ASN
Query on ASN

Download Ideal Coordinates CCD File 
E [auth A], QA [auth D], V [auth B], Y [auth C]ASPARAGINE
C4 H8 N2 O3
DCXYFEDJOCDNAF-REOHCLBHSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
F [auth A] , G [auth A] , H [auth A] , I [auth A] , J [auth A] , KA [auth C] , LA [auth C] , MA [auth C] , 
F [auth A],  G [auth A],  H [auth A],  I [auth A],  J [auth A],  KA [auth C],  LA [auth C],  MA [auth C],  NA [auth C],  OA [auth C],  PA [auth C],  W [auth B],  X [auth B]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
AA [auth C] , BA [auth C] , CA [auth C] , DA [auth C] , EA [auth C] , FA [auth C] , GA [auth C] , HA [auth C] , 
AA [auth C],  BA [auth C],  CA [auth C],  DA [auth C],  EA [auth C],  FA [auth C],  GA [auth C],  HA [auth C],  IA [auth C],  JA [auth C],  K [auth A],  L [auth A],  M [auth A],  N [auth A],  O [auth A],  P [auth A],  Q [auth A],  R [auth A],  S [auth A],  T [auth A],  U [auth A],  Z [auth C]
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, DL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 124.823α = 90
b = 124.823β = 90
c = 137.577γ = 120
Software Package:
Software NamePurpose
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-01-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance