3KV1

Crystal Structure of Putative Sugar-Binding Domain of Transcriptional Repressor from Vibrio fischeri


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Putative Sugar-Binding Domain of Transcriptional Repressor from Vibrio fischeri

Kim, Y.Marshall, N.Bearden, J.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transcriptional repressor
A
267Aliivibrio fischeri (strain ATCC 700601 / ES114)Mutation(s): 0 
Gene Names: lsrR
EC: 2.7.1.69
Find proteins for Q5E0H6 (Aliivibrio fischeri (strain ATCC 700601 / ES114))
Go to UniProtKB:  Q5E0H6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.165 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 129.382α = 90.00
b = 43.474β = 104.15
c = 47.536γ = 90.00
Software Package:
Software NamePurpose
SBC-Collectdata collection
SHELXSphasing
RESOLVEphasing
HKL-3000data reduction
HKL-3000data collection
SOLVEphasing
RESOLVEmodel building
HKL-3000data scaling
HKL-3000phasing
MLPHAREphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance