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Download EndnoteCrystal Structure of Putative Sugar-Binding Domain of Transcriptional Repressor from Vibrio fischeri
Kim, Y., Marshall, N., Bearden, J., Joachimiak, A.To be published.
3KV1
Crystal Structure of Putative Sugar-Binding Domain of Transcriptional Repressor from Vibrio fischeri
- DOI: 10.2210/pdb3KV1/pdb
- Classification: TRANSCRIPTION
- Organism(s): Aliivibrio fischeri (strain ATCC 700601 / ES114)
- Expression System: Escherichia coli
- Deposited: 2009-11-28 Released: 2009-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.201
- R-Value Work: 0.165
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Transcriptional repressor | A | 267 | Aliivibrio fischeri (strain ATCC 700601 / ES114) | Mutation(s): 0 Gene Names: lsrR EC: 2.7.1.69 |
Find proteins for Q5E0H6 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Go to UniProtKB: Q5E0H6 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.201
- R-Value Work: 0.165
- Space Group: C 1 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 129.382 | α = 90.00 |
| b = 43.474 | β = 104.15 |
| c = 47.536 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXS | phasing |
| RESOLVE | phasing |
| HKL-3000 | data reduction |
| HKL-3000 | data collection |
| SOLVE | phasing |
| RESOLVE | model building |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| PHENIX | refinement |
Entry History
Deposition Data
- Deposited Date: 2009-11-28
- Released Date: 2009-12-22
- Deposition Author(s): Kim, Y., Marshall, N., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
