3KAO

Crystal structure of tagatose 1,6-diphosphate aldolase from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.171 
  • R-Value Work: 0.148 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of tagatose 1,6-diphosphate aldolase from Staphylococcus aureus

Chang, C.Marshall, N.Cobb, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tagatose 1,6-diphosphate aldolase
A
329Staphylococcus aureus (strain Mu50 / ATCC 700699)Mutation(s): 0 
Gene Names: lacD
EC: 4.1.2.40
Find proteins for P0A009 (Staphylococcus aureus (strain Mu50 / ATCC 700699))
Go to UniProtKB:  P0A009
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.171 
  • R-Value Work: 0.148 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 84.704α = 90.00
b = 84.704β = 90.00
c = 202.759γ = 90.00
Software Package:
Software NamePurpose
SHELXDphasing
HKL-3000data scaling
HKL-3000phasing
RESOLVEmodel building
SBC-Collectdata collection
REFMACrefinement
ARP/wARPmodel building
Cootmodel building
RESOLVEphasing
SHELXEmodel building
DMphasing
DMmodel building
MLPHAREphasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-10-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description