3K3D | pdb_00003k3d

The N-terminal PAS domain crystal structure of RV1364C from Mycobacterium Tuberculosis at 2.3 angstrom

PDB DOI: https://doi.org/10.2210/pdb3K3D/pdb

Classification: SIGNALING PROTEIN
Organism(s): Mycobacterium tuberculosis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-10-02 Released: 2010-09-29
Deposition Author(s): King-Scott, J., Panjikar, S., Tucker, P.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.295 (Depositor), 0.276 (DCC)
R-Value Work:
0.243 (Depositor), 0.230 (DCC)
R-Value Observed:
0.251 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The N-Terminal Pas Domain Crystal Structure of Rv1364C from Mycobacterium Tuberculosis at 2.3 Angstrom.

King-Scott, J., Panjikar, S., Tucker, P.A.

To be published.

Macromolecule Content

Total Structure Weight: 16.84 kDa
Atom Count: 1,053
Modeled Residue Count: 127
Deposited Residue Count: 149
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein Rv1364c/MT1410	A	149	Mycobacterium tuberculosis	Mutation(s): 0 Gene Names: MT1410, MTCY02B10.28c, Rv1364c EC: 2.7.11.1 (UniProt), 3.1.3.16 (UniProt)
UniProt
Find proteins for P9WLZ7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WLZ7 Go to UniProtKB: P9WLZ7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P9WLZ7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.295 (Depositor), 0.276 (DCC)
R-Value Work: 0.243 (Depositor), 0.230 (DCC)
R-Value Observed: 0.251 (Depositor)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.137	α = 90
b = 60.137	β = 90
c = 171.948	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
Auto-Rickshaw	phasing
REFMAC	refinement
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-09-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-09-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-04-03
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.3: 2024-11-27
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.