3K2D

Crystal structure of Immunogenic lipoprotein A from Vibrio vulnificus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of Toll-like receptor 2-activating lipoprotein IIpA from Vibrio vulnificus.

Yu, S.Lee, N.Y.Park, S.J.Rhee, S.

(2011) Proteins 79: 1020-1025


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ABC-type metal ion transport system, periplasmic component
A, B
237Vibrio vulnificus (strain CMCP6)Mutation(s): 4 
Find proteins for A0A3Q0L1R9 (Vibrio vulnificus (strain CMCP6))
Go to UniProtKB:  A0A3Q0L1R9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MET
Query on MET

Download SDF File 
Download CCD File 
A, B
METHIONINE
C5 H11 N O2 S
FFEARJCKVFRZRR-BYPYZUCNSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.225 
  • Space Group: F 4 3 2
Unit Cell:
Length (Å)Angle (°)
a = 273.600α = 90.00
b = 273.600β = 90.00
c = 273.600γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PDB_EXTRACTdata extraction
HKL-2000data reduction
SCALEPACKdata scaling
PHENIXphasing
DENZOdata reduction
CNSrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2009-09-30 
  • Released Date: 2010-10-13 
  • Deposition Author(s): Yu, S., Rhee, S.

Revision History 

  • Version 1.0: 2010-10-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-04-18
    Type: Database references
  • Version 1.3: 2017-11-01
    Type: Refinement description