Download MendeleyAmino acids from purines in GUT bacteria
Costa, R., Cendron, L., Ramazzina, I., Berni, R., Peracchi, A., Zanotti, G., Percudani, R.To be published.
3ISL | pdb_00003isl
3ISL | pdb_00003isl
Crystal structure of ureidoglycine-glyoxylate aminotransferase (pucG) from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb3ISL/pdb
- Classification: TRANSFERASE
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-08-26 Released: 2010-09-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.247 (Depositor), 0.260 (DCC)
- R-Value Work: 0.193 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.196 (Depositor)
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Purine catabolism protein pucG | 416 | Bacillus subtilis | Mutation(s): 0 Gene Names: pucG, yurG, BSU32520 EC: 2 (PDB Primary Data), 2.6.1.112 (UniProt) |  | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O32148 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Download:Ideal Coordinates CCD File | C [auth A], D [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.247 (Depositor), 0.260 (DCC)
- R-Value Work: 0.193 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.196 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.4 | α = 90 |
| b = 95.99 | β = 114.23 |
| c = 101.29 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2010-09-15 Deposition Author(s): Costa, R., Cendron, L., Ramazzina, I., Berni, R., Peracchi, A., Percudani, R., Zanotti, G.
Revision History (Full details and data files)
- Version 1.0: 2010-09-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
