3IPJ

The crystal structure of one domain of the PTS system, IIabc component from Clostridium difficile


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.133 
  • R-Value Observed: 0.135 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The crystal structure of one domain of the PTS system, IIabc component from Clostridium difficile

Zhang, R.Bigelow, L.Cobb, G.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PTS system, IIabc component AB95Clostridioides difficile 630Mutation(s): 0 
Gene Names: CD0469GI:115249482CD630_04690
EC: 2.7.1.69
Find proteins for Q188R0 (Clostridioides difficile (strain 630))
Explore Q188R0 
Go to UniProtKB:  Q188R0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.133 
  • R-Value Observed: 0.135 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.635α = 90
b = 34.734β = 90.07
c = 72.195γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
CNSrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-10-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2019-07-24
    Changes: Data collection, Refinement description