3IL6

Structure of E. faecalis FabH in complex with 2-({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxybenzoyl}amino)benzoic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structures of bacterial FabH suggest a molecular basis for the substrate specificity of the enzyme.

Gajiwala, K.S.Margosiak, S.Lu, J.Cortez, J.Su, Y.Nie, Z.Appelt, K.

(2009) FEBS Lett 583: 2939-2946

  • DOI: 10.1016/j.febslet.2009.08.001
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • FabH (beta-ketoacyl-acyl carrier protein synthase III) is unique in that it initiates fatty acid biosynthesis, is inhibited by long-chain fatty acids providing means for feedback control of the process, and dictates the fatty acid profile of the orga ...

    FabH (beta-ketoacyl-acyl carrier protein synthase III) is unique in that it initiates fatty acid biosynthesis, is inhibited by long-chain fatty acids providing means for feedback control of the process, and dictates the fatty acid profile of the organism by virtue of its substrate specificity. We report the crystal structures of bacterial FabH enzymes from four different pathogenic species: Enterococcus faecalis, Haemophilus influenzae, Staphylococcus aureus and Escherichia coli. Structural data on the enzyme from different species show important differences in the architecture of the substrate-binding sites that parallel the inter-species diversity in the substrate specificities of these enzymes.


    Organizational Affiliation

    Quorex Pharmaceuticals, Carlsbad, CA 92008, USA. ketan.gajiwala@pfizer.com



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-oxoacyl-[acyl-carrier-protein] synthase 3A321Enterococcus faecalisMutation(s): 3 
Gene Names: EF_2885fabH
EC: 2.3.1.180
Find proteins for Q820T1 (Enterococcus faecalis (strain ATCC 700802 / V583))
Explore Q820T1 
Go to UniProtKB:  Q820T1
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B83
Query on B83

Download CCD File 
A
2-[({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxyphenyl}carbonyl)amino]benzoic acid
C27 H28 N2 O4
YMZMFFRGSWCLPY-KDURUIRLSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SCY
Query on SCY
AL-PEPTIDE LINKINGC5 H9 N O3 SCYS
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
B83IC50:  270   nM  BindingDB
B83IC50:  269.7699890136719   nM  BindingDB
B83IC50 :  270   nM  PDBBind
B83IC50:  270   nM  Binding MOAD
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.190 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 119.263α = 90
b = 119.263β = 90
c = 68.921γ = 120
Software Package:
Software NamePurpose
MAR345dtbdata collection
CNXrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-08-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance