Download MendeleyCrystal structure of Aminotransferase, class III from Deinococcus radiodurans
Fedorov, A.A., Fedorov, E.V., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3I4J
Crystal structure of Aminotransferase, class III from Deinococcus radiodurans
- PDB DOI: 10.2210/pdb3I4J/pdb
- Classification: TRANSFERASE
- Organism(s): Deinococcus radiodurans
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2009-07-01 Released: 2009-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.239
- R-Value Work: 0.218
- R-Value Observed: 0.218
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminotransferase, class III | A, B, C, D | 430 | Deinococcus radiodurans | Mutation(s): 1 Gene Names: DR_A0121 |  |
UniProt | |||||
Find proteins for Q9RZ32 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)) Explore Q9RZ32 Go to UniProtKB: Q9RZ32 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9RZ32 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth B], G [auth C], H [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.239
- R-Value Work: 0.218
- R-Value Observed: 0.218
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.746 | α = 90 |
| b = 193.124 | β = 105.41 |
| c = 64.769 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHENIX | model building |
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Deposited Date: 2009-07-01
- Released Date: 2009-07-14 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2012-10-24
Changes: Structure summary - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2021-10-13
Changes: Database references
