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Download EndnoteThe crystal structure of the D-alanyl-alanine synthetase A from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Zhang, R., Maltseva, N., Papazisi, L., Anderson, W., Joachimiak, A.To be published.
3I12
The crystal structure of the D-alanyl-alanine synthetase A from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
- DOI: 10.2210/pdb3I12/pdb
- Classification: LIGASE
- Organism(s): Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
- Expression System: Escherichia coli
- Deposited: 2009-06-25 Released: 2009-08-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.249
- R-Value Work: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-alanine-D-alanine ligase A | A, B, C, D | 364 | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) | Mutation(s): 0 Gene Names: ddlA EC: 6.3.2.4 |
Find proteins for P0A1F0 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Go to UniProtKB: P0A1F0 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP Query on ADP | A, B, C, D | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.249
- R-Value Work: 0.197
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 85.153 | α = 90.00 |
| b = 85.813 | β = 90.00 |
| c = 230.893 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
| HKL-3000 | data scaling |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2009-06-25
- Released Date: 2009-08-18
- Deposition Author(s): Zhang, R., Maltseva, N., Papazisi, L., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History
- Version 1.0: 2009-08-18
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance
