Macromolecule Content

Total Structure Weight: 97.53 kDa
Atom Count: 7,057
Modelled Residue Count: 796
Deposited Residue Count: 832
Unique protein chains: 1

3HXA

Crystal Structure of DCoH1Thr51Ser

PDB DOI: 10.2210/pdb3HXA/pdb

Classification: LYASE
Organism(s): Rattus norvegicus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2009-06-20 Released: 2010-08-25
Deposition Author(s): Rho, H.Y., Jones, C.N., Rose, R.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226
R-Value Work: 0.211

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of DCoH1Thr51Ser

Rho, H.Y., Jones, C.N., Rose, R.B.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pterin-4-alpha-carbinolamine dehydratase	A, B, C, D, E, F, G, H A, B, C, D, E, F, G, H	104	Rattus norvegicus	Mutation(s): 1 Gene Names: Dcoh, Pcbd, PCBD/DCoH, Pcbd1 EC: 4.2.1.96
UniProt
Find proteins for P61459 (Rattus norvegicus) Explore P61459 Go to UniProtKB: P61459
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61459
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain L [auth C] SDF format, chain N [auth D] SDF format, chain P [auth E] SDF format, chain R [auth F] SDF format, chain T [auth G] SDF format, chain X [auth H] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth C] MOL2 format, chain N [auth D] MOL2 format, chain P [auth E] MOL2 format, chain R [auth F] MOL2 format, chain T [auth G] MOL2 format, chain X [auth H]	I [auth A], K [auth B], L [auth C], N [auth D], P [auth E], I [auth A], K [auth B], L [auth C], N [auth D], P [auth E], R [auth F], T [auth G], X [auth H]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain M [auth C] SDF format, chain O [auth D] SDF format, chain Q [auth E] SDF format, chain S [auth F] SDF format, chain U [auth G] SDF format, chain V [auth G] SDF format, chain W [auth G] MOL2 format, chain J [auth A] MOL2 format, chain M [auth C] MOL2 format, chain O [auth D] MOL2 format, chain Q [auth E] MOL2 format, chain S [auth F] MOL2 format, chain U [auth G] MOL2 format, chain V [auth G] MOL2 format, chain W [auth G]	J [auth A], M [auth C], O [auth D], Q [auth E], S [auth F], J [auth A], M [auth C], O [auth D], Q [auth E], S [auth F], U [auth G], V [auth G], W [auth G]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226
R-Value Work: 0.211
Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.805	α = 90
b = 103.805	β = 90
c = 193.629	γ = 120

Software Package:

Software Name	Purpose
SCALA	data scaling
CNS	refinement
PDB_EXTRACT	data extraction
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-08-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-08-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-10-13
Changes: Database references, Derived calculations

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.