Crystal Structure of PRC-barrel Domain Protein from Rhodopseudomonas palustris
Kim, Y., Tesar, C., Jedrzejczak, R., Kinney, J., Babnigg, G., Harwood, C., Kerfeld, C., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
uncharacterized PRC-barrel Domain Protein | A, B | 120 | Rhodopseudomonas palustris | Mutation(s): 0  Gene Names: RPA4758 | ![]() |
UniProt | |||||
Find proteins for Q6N0K4 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6N0K4  Go to UniProtKB:  Q6N0K4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6N0K4 | ||||
Protein Feature ViewExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | C [auth A], D [auth A], G [auth B], H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction | ||
ACY Query on ACY | E [auth A], F [auth A], I [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 25.644 | α = 90 |
b = 63.061 | β = 99.39 |
c = 61.866 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
PHENIX | model building |
SOLVE | phasing |
RESOLVE | model building |
Coot | model building |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |
RESOLVE | phasing |