3HQX | pdb_00003hqx

Crystal structure of protein of unknown function (DUF1255,PF06865) from Acinetobacter sp. ADP1

PDB DOI: https://doi.org/10.2210/pdb3HQX/pdb

Classification: structural genomics, unknown function
Organism(s): Acinetobacter baylyi ADP1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-06-08 Released: 2009-06-30
Deposition Author(s): Nocek, B., Hatzos, C., Freeman, L., Dauter, Z., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free:
0.202 (Depositor), 0.231 (DCC)
R-Value Work:
0.163 (Depositor), 0.196 (DCC)
R-Value Observed:
0.165 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of protein of unknown function (DUF1255,PF06865) from Acinetobacter sp. ADP1

Nocek, B., Hatzos, C., Freeman, L., Dauter, Z., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 12.45 kDa
Atom Count: 931
Modeled Residue Count: 105
Deposited Residue Count: 111
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0345 protein ACIAD0356	A	111	Acinetobacter baylyi ADP1	Mutation(s): 0 Gene Names: ACIAD0356 EC: 2.4.2.1 (UniProt), 2.4.2.2 (UniProt)
UniProt
Find proteins for Q6FF51 (Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)) Explore Q6FF51 Go to UniProtKB: Q6FF51
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6FF51
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.202 (Depositor), 0.231 (DCC)
R-Value Work: 0.163 (Depositor), 0.196 (DCC)
R-Value Observed: 0.165 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.05	α = 90
b = 25.952	β = 90
c = 55.23	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELX	model building
ARP/wARP	model building
Coot	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-06-30

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2009-06-30
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.