3HLU

Crystal Structure of Uncharacterized Protein Conserved in Bacteria DUF2179 from Eubacterium ventriosum

• PDB DOI: https://doi.org/10.2210/pdb3HLU/pdb

• Classification: structural genomics, unknown function
• Organism(s): Eubacterium ventriosum ATCC 27560
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2009-05-28 Released: 2009-07-07 
• Deposition Author(s): Kim, Y., Li, H., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 0.252 
• R-Value Work: 0.226 
• R-Value Observed: 0.227 

Literature

Crystal Structure of Uncharacterized Protein Conserved in Bacteria DUF2179 from Eubacterium ventriosum

Kim, Y., Li, H., Keigher, L., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 22.16 kDa 
• Atom Count: 1,174 
• Modelled Residue Count: 146 
• Deposited Residue Count: 192 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein DUF2179	A, B	96	Eubacterium ventriosum ATCC 27560	Mutation(s): 0  Gene Names: EUBVEN_01903
UniProt
Find proteins for A5Z863 (Eubacterium ventriosum ATCC 27560) Explore A5Z863  Go to UniProtKB:  A5Z863

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 0.252 
• R-Value Work: 0.226 
• R-Value Observed: 0.227 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.588	α = 90
b = 63.392	β = 90
c = 82.197	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
SHELXD	phasing
MLPHARE	phasing
DM	model building
RESOLVE	model building
Coot	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-07-07 
Deposition Author(s): Kim, Y., Li, H., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2009-07-07
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance