3HHE

Crystal structure of ribose-5-phosphate isomerase A from Bartonella henselae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of ribose-5-phosphate isomerase A from Bartonella henselae

Edwards, T.E.Abendroth, J.A.Staker, B.L.Seattle Structural Genomics Center for Infectious Disease

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribose-5-phosphate isomerase A
A, B
255Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1)Mutation(s): 0 
Gene Names: rpiA
EC: 5.3.1.6
Find proteins for Q6G3V6 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1))
Go to UniProtKB:  Q6G3V6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A, B
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
5RP
Query on 5RP

Download SDF File 
Download CCD File 
A, B
RIBULOSE-5-PHOSPHATE
C5 H11 O8 P
FNZLKVNUWIIPSJ-UHNVWZDZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.205 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 40.190α = 90.00
b = 79.584β = 90.00
c = 151.127γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
DENZOdata reduction
MAR345data collection
REFMACrefinement
SCALEPACKdata scaling
MOLREPphasing
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-05-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description