Download MendeleyThe Crystal Structure of an Isochorismatase-like Hydrolase from Alkaliphilus metalliredigens to 2.3A
Stein, A.J., Xu, X., Cui, H., Ng, J., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
3HB7
The Crystal Structure of an Isochorismatase-like Hydrolase from Alkaliphilus metalliredigens to 2.3A
- PDB DOI: 10.2210/pdb3HB7/pdb
- Classification: HYDROLASE
- Organism(s): Alkaliphilus metalliredigens QYMF
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-05-04 Released: 2009-07-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.238
- R-Value Work: 0.196
- R-Value Observed: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Isochorismatase hydrolase | 204 | Alkaliphilus metalliredigens QYMF | Mutation(s): 0 Gene Names: Amet_4583 |  | |
UniProt | |||||
Find proteins for A6TWT6 (Alkaliphilus metalliredigens (strain QYMF)) Explore A6TWT6 Go to UniProtKB: A6TWT6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A6TWT6 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | J [auth A], M [auth B], P [auth E], Q [auth F], R [auth G] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| NH4 Query on NH4 | I [auth A], K [auth C], L [auth B], N [auth D], O [auth E], | AMMONIUM ION H4 N QGZKDVFQNNGYKY-UHFFFAOYSA-O |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B [auth C], C [auth B], D, E, | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.238
- R-Value Work: 0.196
- R-Value Observed: 0.198
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 85.651 | α = 90 |
| b = 105.425 | β = 103.9 |
| c = 106.267 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELX | phasing |
| MLPHARE | phasing |
| DM | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Deposited Date: 2009-05-04
- Released Date: 2009-07-07 Deposition Author(s): Stein, A.J., Xu, X., Cui, H., Ng, J., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-07-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
