3H12

Crystal structure of putative mandelate racemase from Bordetella Bronchiseptica RB50


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of putative mandelate racemase from Bordetella Bronchiseptica RB50

Malashkevich, V.N.Toro, R.Morano, C.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
mandelate racemase
A, B
397Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)Mutation(s): 0 
Find proteins for A0A0H3LT39 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50))
Go to UniProtKB:  A0A0H3LT39
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.146 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 116.148α = 90.00
b = 116.148β = 90.00
c = 128.136γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
HKL-2000data reduction
DENZOdata reduction
PDB_EXTRACTdata extraction
SHELXDphasing
CBASSdata collection
SHELXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-04-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2012-10-24
    Type: Structure summary
  • Version 1.3: 2017-11-01
    Type: Refinement description
  • Version 1.4: 2018-11-21
    Type: Data collection, Structure summary