3GSD

2.05 Angstrom structure of a divalent-cation tolerance protein (CutA) from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.159 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

2.05 Angstrom Structure of a Divalent-cation Tolerance Protein (CutA) from Yersinia pestis

Minasov, G.Wawrzak, Z.Skarina, T.Onopriyenko, O.Peterson, S.N.Savchenko, A.Anderson, W.F.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Divalent-cation tolerance protein cutA
A, B, C, D, E, F, G, H, I, J, K, L
A, B, C, D, E, F, G, H, I, J, K, L
122Yersinia pestis CO92Mutation(s): 0 
Gene Names: cutAy0604YPO0346YP_0500
UniProt
Find proteins for Q74XD3 (Yersinia pestis)
Explore Q74XD3 
Go to UniProtKB:  Q74XD3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ74XD3
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download Ideal Coordinates CCD File 
AB [auth J],
CA [auth D],
DB [auth K],
FA [auth E],
IB [auth L],
AB [auth J],
CA [auth D],
DB [auth K],
FA [auth E],
IB [auth L],
JB [auth L],
LA [auth F],
PA [auth G],
Q [auth A],
SA [auth H],
U [auth B],
XA [auth I],
Y [auth C]
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download Ideal Coordinates CCD File 
BA [auth D],
CB [auth K],
EA [auth E],
HB [auth L],
JA [auth F],
BA [auth D],
CB [auth K],
EA [auth E],
HB [auth L],
JA [auth F],
OA [auth G],
P [auth A],
QA [auth H],
T [auth B],
W [auth C],
WA [auth I],
ZA [auth J]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
KA [auth F],
RA [auth H],
X [auth C]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
AA [auth D],
BB [auth K],
DA [auth E],
EB [auth L],
FB [auth L],
AA [auth D],
BB [auth K],
DA [auth E],
EB [auth L],
FB [auth L],
GA [auth F],
GB [auth L],
HA [auth F],
IA [auth F],
M [auth A],
MA [auth G],
N [auth A],
NA [auth G],
O [auth A],
R [auth B],
S [auth B],
TA [auth I],
UA [auth I],
V [auth C],
VA [auth I],
YA [auth J],
Z [auth D]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L
A, B, C, D, E, F, G, H, I, J, K, L
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 140.782α = 90
b = 157.914β = 90
c = 157.132γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
BALBESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-04-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description