3GKQ

Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.436 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.214 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Specific interaction via putidaredoxin-type ferredoxin in carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1

Umeda, T.Katsuki, J.Ashikawa, Y.Inoue, K.Usami, Y.Noguchi, H.Terada, T.Abo, M.Fujimoto, Z.Yamane, H.Nojiri, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Terminal oxygenase component of carbazole 1,9a-dioxygenase
A, B, C, D, E, F
A, B, C, D, E, F
389Novosphingobium sp. KA1Mutation(s): 0 
Gene Names: carAaII
UniProt
Find proteins for Q2PFA6 (Novosphingobium sp. (strain KA1))
Explore Q2PFA6 
Go to UniProtKB:  Q2PFA6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2PFA6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FES
Query on FES

Download Ideal Coordinates CCD File 
H [auth A],
K [auth B],
N [auth C],
Q [auth D],
T [auth E],
H [auth A],
K [auth B],
N [auth C],
Q [auth D],
T [auth E],
W [auth F]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
FE2
Query on FE2

Download Ideal Coordinates CCD File 
G [auth A],
I [auth A],
J [auth B],
L [auth B],
M [auth C],
G [auth A],
I [auth A],
J [auth B],
L [auth B],
M [auth C],
O [auth C],
P [auth D],
R [auth D],
S [auth E],
U [auth E],
V [auth F],
X [auth F]
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.436 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.214 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 117.147α = 90
b = 159.019β = 94.45
c = 167.774γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-31
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2015-04-08
    Changes: Refinement description