3GFH

Crystal structure of EUTL shell protein of the bacterial ethanolamine micrompartment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.223 

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This is version 1.3 of the entry. See complete history


Literature

Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartment

Sagermann, M.Ohtaki, A.Nikolakakis, K.

(2009) Proc Natl Acad Sci U S A 106: 8883-8887

  • DOI: https://doi.org/10.1073/pnas.0902324106
  • Primary Citation of Related Structures:  
    3GFH

  • PubMed Abstract: 

    Bacterial microcompartments (BMCs) are specialized organelles that use proteinaceous membranes to confine chemical reaction spaces. The ethanolamine ammonialyase microcompartment of Escherichia coli represents such a class of cytosolic organelles that enables bacteria to survive on small organic molecules such as ethanolamine as the sole source for carbon and nitrogen. We present here the crystal structure of the shell protein EutL at 2.2-A resolution. With 219 residues, it is the largest representative of this BMC's shell proteins. In the crystal, EutL forms a trimer that exhibits a hexagonally shaped tile structure. The tiles arrange into a tightly packed 2D array that is likely to resemble the proteinaceous membrane of the intact BMC. In contrast to other BMC shell proteins, which have only 1 pore per tile, EutL exhibits 3 pores per tile, thereby significantly increasing the overall porosity of this protein membrane. Each of the individual pores is lined with negatively charged residues and aromatic residues that are proposed to facilitate passive transport of specific solutes. The characteristic shape of the hexagonal tile, which is also found in the microcompartments of carbon-fixating bacteria, may present an inherent and fundamental building unit that may provide a general explanation for the formation of differently sized microcompartments.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106, USA. sagermann@chem.ucsb.edu


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ethanolamine utilization protein eutL
A, B
225Escherichia coli K-12Mutation(s): 0 
Gene Names: b2439EUT-LeutLJW2432yffJ
UniProt
Find proteins for P76541 (Escherichia coli (strain K12))
Explore P76541 
Go to UniProtKB:  P76541
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP76541
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.223 
  • Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.384α = 90
b = 67.384β = 90
c = 79.661γ = 120
Software Package:
Software NamePurpose
ADSCdata collection
SOLVEphasing
REFMACrefinement
ANDdata reduction
ANDdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-07-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations
  • Version 1.3: 2024-04-03
    Changes: Refinement description