3GDO

Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of putative oxidoreductase yvaA from Bacillus subtilis.

Ramagopal, U.A.Toro, R.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized oxidoreductase yvaA
A, B
358Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: iolW (yvaA)
EC: 1.1.1.371
Find proteins for O32223 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O32223
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.204 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 49.324α = 90.00
b = 151.309β = 107.14
c = 56.395γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
HKL-2000data reduction
SHELXEmodel building
CCP4phasing
PDB_EXTRACTdata extraction
PHENIXphasing
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-03-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description