3FZ8

Crystal structure of glutamate decarboxylase beta from Escherichia coli: reduced Schiff base with PLP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of glutamate decarboxylase beta from Escherichia coli: reduced Schiff base with PLP

Malashkevich, V.N.De Biase, D.Bossa, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glutamate decarboxylase beta
A, B, C, D, E, F
466Escherichia coli (strain K12)Gene Names: gadB
EC: 4.1.1.15
Find proteins for P69910 (Escherichia coli (strain K12))
Go to UniProtKB:  P69910
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PLR
Query on PLR

Download SDF File 
Download CCD File 
A, B, C, D, E, F
(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE
4'-DEOXYPYRIDOXINE PHOSPHATE
C8 H12 N O5 P
RBCOYOYDYNXAFA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.165 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 116.896α = 90.00
b = 116.894β = 90.00
c = 208.586γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
MAR345data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-02-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description