3FYM

The 1A structure of YmfM, a putative DNA-binding membrane protein from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.00 Å
  • R-Value Free: 0.140 
  • R-Value Work: 0.110 
  • R-Value Observed: 0.110 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The 1A structure of YmfM, a putative DNA-binding membrane protein from Staphylococcus aureus

Xu, L.Sedelnikova, S.E.Baker, P.J.Rice, D.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative uncharacterized proteinA130Staphylococcus aureus subsp. aureus Mu50Mutation(s): 0 
Gene Names: SAV1282
Find proteins for A0A0H3JZ73 (Staphylococcus aureus (strain Mu50 / ATCC 700699))
Explore A0A0H3JZ73 
Go to UniProtKB:  A0A0H3JZ73
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.00 Å
  • R-Value Free: 0.140 
  • R-Value Work: 0.110 
  • R-Value Observed: 0.110 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.456α = 90
b = 45.456β = 90
c = 72.903γ = 90
Software Package:
Software NamePurpose
SHELXrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
MOSFLMdata reduction
SCALAdata scaling
SHELXSphasing
SHELXLrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-02-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance