3FSG

Crystal structure of alpha/beta superfamily hydrolase from Oenococcus oeni PSU-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of alpha/beta superfamily hydrolase from Oenococcus oeni PSU-1

Nocek, B.Bigelow, L.Cobb, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alpha/beta superfamily hydrolase
A, B, C
272Oenococcus oeni (strain ATCC BAA-331 / PSU-1)Mutation(s): 0 
Find proteins for Q04D10 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1))
Go to UniProtKB:  Q04D10
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Alpha/beta superfamily hydrolase
D
272Oenococcus oeni (strain ATCC BAA-331 / PSU-1)Mutation(s): 0 
Find proteins for Q04D10 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1))
Go to UniProtKB:  Q04D10
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, B, C, D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A, B, C
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.180 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 217.493α = 90.00
b = 40.580β = 107.50
c = 135.980γ = 90.00
Software Package:
Software NamePurpose
CCP4model building
REFMACrefinement
MLPHAREphasing
PHENIXmodel building
SHELXDphasing
PHENIXphasing
HKL-3000phasing
SBC-Collectdata collection
HKL-3000data reduction
Cootmodel building
HKL-3000data scaling
CCP4phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-01-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance