3FRW

Crystal structure of putative TrpR protein from Ruminococcus obeum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

X-ray crystal structure of putative TrpR protein from Ruminococcus obeum.

Osipiuk, J.Keigher, L.Jedrzejczak, R.Babnigg, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative Trp repressor protein
A, B, C, D, E, F, G, H
107Blautia obeum ATCC 29174Mutation(s): 0 
Find proteins for A5ZMD8 (Blautia obeum ATCC 29174)
Go to UniProtKB:  A5ZMD8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
B, D, F
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.180 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 67.601α = 90.00
b = 110.991β = 101.47
c = 77.262γ = 90.00
Software Package:
Software NamePurpose
RESOLVEphasing
HKL-3000data scaling
SCALEPACKdata scaling
SHELXDphasing
DMphasing
SBC-Collectdata collection
DENZOdata reduction
REFMACrefinement
SOLVEphasing
HKL-3000phasing
MLPHAREphasing
HKL-3000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-01-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description