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Download EndnoteThe crystal structure of a functionally unknown conserved protein from Staphylococcus epidermidis ATCC 12228.
Tan, K., Sather, A., Clancy, S., Joachimiak, A.To be published.
3FRM
The crystal structure of a functionally unknown conserved protein from Staphylococcus epidermidis ATCC 12228.
- DOI: 10.2210/pdb3FRM/pdb
- Classification: structural genomics, unknown function
- Organism(s): Staphylococcus epidermidis ATCC 12228
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-01-08 Released: 2009-01-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.263
- R-Value Work: 0.197
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| uncharacterized conserved protein | A, B, C, D, E, F | 254 | Staphylococcus epidermidis ATCC 12228 | Mutation(s): 0 Gene Names: SE_1855, Staphylococcus epidermidis |
Find proteins for A0A0H2VHN1 (Staphylococcus epidermidis (strain ATCC 12228)) Go to UniProtKB: A0A0H2VHN1 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MES Query on MES | E, F | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | A, B, C, D, E | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| NA Query on NA | A, B, C, D, E, F | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B,C,D,E,F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.263
- R-Value Work: 0.197
- R-Value Observed: 0.200
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.711 | α = 90 |
| b = 126.549 | β = 94.52 |
| c = 112.807 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| RESOLVE | model building |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Deposited Date: 2009-01-08
- Released Date: 2009-01-27 Deposition Author(s): Tan, K., Sather, A., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
