3FMV | pdb_00003fmv

Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253.

PDB DOI: https://doi.org/10.2210/pdb3FMV/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-12-22 Released: 2009-01-06
Deposition Author(s): Kuzin, A.P., Chen, Y., Seetharaman, J., Forouhar, F., Chinag, Y., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.31 Å
R-Value Free:
0.280 (Depositor), 0.295 (DCC)
R-Value Work:
0.228 (Depositor), 0.245 (DCC)
R-Value Observed:
0.228 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253.

Kuzin, A.P., Chen, Y., Seetharaman, J., Forouhar, F., Chinag, Y., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 186.61 kDa
Atom Count: 12,432
Modeled Residue Count: 1,520
Deposited Residue Count: 1,560
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine phosphatase of RNA polymerase II CTD	A, B, C, D, E A, B, C, D, E, F, G, H	195	Drosophila melanogaster	Mutation(s): 0 Gene Names: CG14216, Dmel_CG14216 EC: 3.1.3.16
UniProt
Find proteins for Q9VWE4 (Drosophila melanogaster) Explore Q9VWE4 Go to UniProtKB: Q9VWE4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9VWE4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.31 Å
R-Value Free: 0.280 (Depositor), 0.295 (DCC)
R-Value Work: 0.228 (Depositor), 0.245 (DCC)
R-Value Observed: 0.228 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.983	α = 90
b = 98.995	β = 90.87
c = 158.123	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SnB	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-01-06

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2009-01-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary