Download MendeleyStructural and Site-directed Mutagenesis Study of Versatile Peroxidase Oxidizing both Mn(II) and Aromatic Substrates
Piontek, K., Choinowski, T., Perez-Boada, M., Ruiz-Duenas, F.J., Martinez, M.J., Plattner, D.A., Martinez, A.T.To be published.
3FM4
Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii
- PDB DOI: https://doi.org/10.2210/pdb3FM4/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pleurotus eryngii
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2008-12-19 Released: 2009-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.198
- R-Value Work: 0.141
- R-Value Observed: 0.144
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Versatile peroxidase VPL2 | 331 | Pleurotus eryngii | Mutation(s): 1 Gene Names: VPL2 EC: 1.11.1.16 |  | |
UniProt | |||||
Find proteins for O94753 (Pleurotus eryngii) Explore O94753 Go to UniProtKB: O94753 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O94753 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | B [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| CAC Query on CAC | M [auth A], N [auth A] | CACODYLATE ION C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M |  | ||
| ZN Query on ZN | E [auth A] F [auth A] G [auth A] I [auth A] J [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| FE Query on FE | H [auth A], L [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.198
- R-Value Work: 0.141
- R-Value Observed: 0.144
- Space Group: P 43
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.794 | α = 90 |
| b = 62.794 | β = 90 |
| c = 97.875 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| AMoRE | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2009-12-22 Deposition Author(s): Piontek, K., Martinez, A.T., Choinowski, T., Plattner, D.A.
Revision History (Full details and data files)
- Version 1.0: 2009-12-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2021-11-10
Changes: Data collection, Database references, Derived calculations - Version 1.3: 2023-11-01
Changes: Data collection, Refinement description
