3FEU

Crystal Structure of DsbA-like thioredoxin domain VF_A0457 from Vibrio fischeri


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.758 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of DsbA-like thioredoxin domain VF_A0457 from Vibrio fischeri

Kim, Y.Sather, A.Shackelford, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
putative Lipoprotein
A
185Aliivibrio fischeri (strain ATCC 700601 / ES114)Mutation(s): 0 
Find proteins for Q5E0B9 (Aliivibrio fischeri (strain ATCC 700601 / ES114))
Go to UniProtKB:  Q5E0B9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.758 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.188 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 47.807α = 90.00
b = 55.737β = 90.00
c = 62.521γ = 90.00
Software Package:
Software NamePurpose
MLPHAREphasing
HKL-3000data collection
HKL-3000phasing
HKL-3000data scaling
RESOLVEmodel building
RESOLVEphasing
Cootmodel building
HKL-3000data reduction
SHELXDphasing
DMmodel building
REFMACrefinement
DMphasing
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-01-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Source and taxonomy, Version format compliance