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Download EndnoteStructure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.
Cuff, M.E., Xu, X., Zeng, H., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
3FD3
Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.
- DOI: 10.2210/pdb3FD3/pdb
- Classification: transcription regulator
- Organism(s): Agrobacterium fabrum (strain C58 / ATCC 33970)
- Expression System: Escherichia coli
- Deposited: 2008-11-24 Released: 2009-02-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| chromosome replication initiation inhibitor protein | A | 208 | Agrobacterium fabrum (strain C58 / ATCC 33970) | Mutation(s): 0 |
Find proteins for A9CJQ0 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Go to UniProtKB: A9CJQ0 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P33 Query on P33 | A | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL HEPTAETHYLENE GLYCOL, PEG330 C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | A | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| PG4 Query on PG4 | A | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
- Space Group: P 43 21 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 53.613 | α = 90.00 |
| b = 53.613 | β = 90.00 |
| c = 188.027 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| ARP/wARP | model building |
| O | model building |
| SCALEPACK | data scaling |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| RESOLVE | phasing |
| SOLVE | phasing |
| DM | phasing |
| SBC-Collect | data collection |
| SHELXE | model building |
| REFMAC | refinement |
| MLPHARE | phasing |
| Coot | model building |
| SHELXD | phasing |
| HKL-3000 | data reduction |
| CCP4 | phasing |
Entry History
Deposition Data
- Deposited Date: 2008-11-24
- Released Date: 2009-02-03
- Deposition Author(s): Cuff, M.E., Xu, X., Zeng, H., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
