Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.
Cuff, M.E., Xu, X., Zeng, H., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
chromosome replication initiation inhibitor protein | A | 208 | Agrobacterium fabrum str. C58 | Mutation(s): 0  Gene Names: AGR_C_1691, Atu0928, oriC | ![]() |
UniProt | |||||
Find proteins for A9CJQ0 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CJQ0  Go to UniProtKB:  A9CJQ0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A9CJQ0 | ||||
Protein Feature ViewExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P33 Query on P33 | C [auth A] | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N | Ligand Interaction | ||
PG4 Query on PG4 | D [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | Ligand Interaction | ||
EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 53.613 | α = 90 |
b = 53.613 | β = 90 |
c = 188.027 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
MLPHARE | phasing |
DM | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SBC-Collect | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
HKL-3000 | phasing |
SHELXD | phasing |
SHELXE | model building |
SOLVE | phasing |
RESOLVE | phasing |
ARP/wARP | model building |
CCP4 | phasing |
O | model building |
Coot | model building |