3EVI

Crystal structure of the thioredoxin-fold domain of human phosducin-like protein 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the thioredoxin-fold domain of human phosducin-like protein 2

Lou, X.Bao, R.Zhou, C.Z.Chen, Y.

(2009) Acta Crystallogr.,Sect.F 65: 67-70

  • DOI: 10.1107/S1744309108037342

  • PubMed Abstract: 
  • Human phosducin-like protein 2 (hPDCL2) has been identified as belonging to subgroup II of the phosducin (Pdc) family. The members of this family share an N-terminal helix domain and a C-terminal thioredoxin-fold (Trx-fold) domain. The X-ray crystal ...

    Human phosducin-like protein 2 (hPDCL2) has been identified as belonging to subgroup II of the phosducin (Pdc) family. The members of this family share an N-terminal helix domain and a C-terminal thioredoxin-fold (Trx-fold) domain. The X-ray crystal structure of the Trx-fold domain of hPDCL2 was solved at 2.70 A resolution and resembled the Trx-fold domain of rat phosducin. Comparative structural analysis revealed the structural basis of their putative functional divergence.


    Organizational Affiliation

    Institute of Protein Research, Tongji University, Shanghai 200092, People's Republic of China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosducin-like protein 2
A, B
118Homo sapiensMutation(s): 0 
Gene Names: PDCL2
Find proteins for Q8N4E4 (Homo sapiens)
Go to Gene View: PDCL2
Go to UniProtKB:  Q8N4E4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A, B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.234 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 44.594α = 90.00
b = 44.594β = 90.00
c = 141.971γ = 120.00
Software Package:
Software NamePurpose
MAR345dtbdata collection
REFMACrefinement
HKL-2000data reduction
PHASERphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-03-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance