3ENO

Crystal structure of Pyrococcus furiosus Pcc1 in complex with Thermoplasma acidophilum Kae1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0201 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.243 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Atomic structure of the KEOPS complex: an ancient protein kinase-containing molecular machine.

Mao, D.Y.Neculai, D.Downey, M.Orlicky, S.Haffani, Y.Z.Ceccarelli, D.F.Ho, J.S.Szilard, R.K.Zhang, W.Ho, C.S.Wan, L.Fares, C.Rumpel, S.Kurinov, I.Arrowsmith, C.H.Durocher, D.Sicheri, F.

(2008) Mol.Cell 32: 259-275

  • DOI: 10.1016/j.molcel.2008.10.002
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Kae1 is a universally conserved ATPase and part of the essential gene set in bacteria. In archaea and eukaryotes, Kae1 is embedded within the protein kinase-containing KEOPS complex. Mutation of KEOPS subunits in yeast leads to striking telomere and ...

    Kae1 is a universally conserved ATPase and part of the essential gene set in bacteria. In archaea and eukaryotes, Kae1 is embedded within the protein kinase-containing KEOPS complex. Mutation of KEOPS subunits in yeast leads to striking telomere and transcription defects, but the exact biochemical function of KEOPS is not known. As a first step to elucidating its function, we solved the atomic structure of archaea-derived KEOPS complexes involving Kae1, Bud32, Pcc1, and Cgi121 subunits. Our studies suggest that Kae1 is regulated at two levels by the primordial protein kinase Bud32, which is itself regulated by Cgi121. Moreover, Pcc1 appears to function as a dimerization module, perhaps suggesting that KEOPS may be a processive molecular machine. Lastly, as Bud32 lacks the conventional substrate-recognition infrastructure of eukaryotic protein kinases including an activation segment, Bud32 may provide a glimpse of the evolutionary history of the protein kinase family.


    Organizational Affiliation

    Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Avenue, Toronto, ON, M5G 1X5, Canada.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative O-sialoglycoprotein endopeptidase
A, B
334Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)Mutation(s): 0 
Find proteins for Q9HLA5 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165))
Go to UniProtKB:  Q9HLA5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
uncharacterized protein PF2011
C, D, E, F
87Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 1 
Find proteins for Q8TZI1 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZI1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0201 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.243 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 66.560α = 90.00
b = 66.560β = 90.00
c = 435.559γ = 120.00
Software Package:
Software NamePurpose
CBASSdata collection
XDSdata scaling
PHENIXrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2008-09-25 
  • Released Date: 2008-10-28 
  • Deposition Author(s): Neculai, D.

Revision History 

  • Version 1.0: 2008-10-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance