3EJO

Coproporphyrinogen III oxidase from Leishmania donovani


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structural investigation of a protozoan coproporphyrinogen iii oxidase

Larson, E.T.Merritt, E.A.Structural Genomics of Pathogenic Protozoa Consortium

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Coproporphyrinogen III oxidase
A, B
310Leishmania donovaniMutation(s): 0 
EC: 1.3.3.3
Find proteins for D0VX00 (Leishmania donovani)
Go to UniProtKB:  D0VX00
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.213 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 53.067α = 86.63
b = 53.991β = 77.77
c = 65.565γ = 61.25
Software Package:
Software NamePurpose
SCALEPACKdata scaling
CrystalCleardata collection
REFMACphasing
REFMACrefinement
HKL-2000data reduction
DENZOdata reduction
PDB_EXTRACTdata extraction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description
  • Version 1.3: 2018-01-24
    Type: Database references